gov.sandia.cognition.statistics.method

Class AbstractPairwiseMultipleHypothesisComparison<StatisticType extends AbstractPairwiseMultipleHypothesisComparison.Statistic>

java.lang.Object

gov.sandia.cognition.util.AbstractCloneableSerializable

gov.sandia.cognition.statistics.method.AbstractMultipleHypothesisComparison<java.util.Collection<? extends java.lang.Number>,StatisticType>

gov.sandia.cognition.statistics.method.AbstractPairwiseMultipleHypothesisComparison<StatisticType>

Type Parameters:

StatisticType - Type of statistic returned by the test

All Implemented Interfaces:

MultipleHypothesisComparison<java.util.Collection<? extends java.lang.Number>>, CloneableSerializable, java.io.Serializable, java.lang.Cloneable

Direct Known Subclasses:

BonferroniCorrection, HolmCorrection, ShafferStaticCorrection, SidakCorrection

public abstract class AbstractPairwiseMultipleHypothesisComparison<StatisticType extends AbstractPairwiseMultipleHypothesisComparison.Statistic>
extends AbstractMultipleHypothesisComparison<java.util.Collection<? extends java.lang.Number>,StatisticType>

A multiple-hypothesis comparison algorithm based on making multiple pair-wise null-hypothesis comparisons.

Since:

3.3.0

Author:

Kevin R. Dixon

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	AbstractPairwiseMultipleHypothesisComparison.Statistic Result from a pairwise multiple-comparison statistic.

Field Summary

Fields

Modifier and Type	Field and Description
static NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>>	DEFAULT_PAIRWISE_TEST Default pair-wise confidence test: Student's Paired t-test.
protected NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>>	pairwiseTest Confidence test used for pair-wise null-hypothesis tests.

Fields inherited from interface gov.sandia.cognition.statistics.method.MultipleHypothesisComparison

DEFAULT_UNCOMPENSATED_ALPHA

Constructor Summary

Constructors

Constructor and Description
AbstractPairwiseMultipleHypothesisComparison(NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>> pairwiseTest) Creates a new instance of BonferroniCorrection

Method Summary

Modifier and Type	Method and Description
AbstractPairwiseMultipleHypothesisComparison<StatisticType>	clone() This makes public the clone method on the Object class and removes the exception that it throws.
NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>>	getPairwiseTest() Getter for pairwiseTest
void	setPairwiseTest(NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>> pairwiseTest) Setter for pairwiseTest

Methods inherited from class gov.sandia.cognition.statistics.method.AbstractMultipleHypothesisComparison

evaluateNullHypotheses, evaluateNullHypotheses

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_PAIRWISE_TEST

public static final NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>> DEFAULT_PAIRWISE_TEST

Default pair-wise confidence test: Student's Paired t-test.

pairwiseTest

protected NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>> pairwiseTest

Confidence test used for pair-wise null-hypothesis tests.

Constructor Detail

AbstractPairwiseMultipleHypothesisComparison

public AbstractPairwiseMultipleHypothesisComparison(NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>> pairwiseTest)

Creates a new instance of BonferroniCorrection

Parameters:

pairwiseTest - Confidence test used for pair-wise null-hypothesis tests.

Method Detail

clone

public AbstractPairwiseMultipleHypothesisComparison<StatisticType> clone()

Description copied from class: AbstractCloneableSerializable

This makes public the clone method on the Object class and removes the exception that it throws. Its default behavior is to automatically create a clone of the exact type of object that the clone is called on and to copy all primitives but to keep all references, which means it is a shallow copy. Extensions of this class may want to override this method (but call super.clone() to implement a "smart copy". That is, to target the most common use case for creating a copy of the object. Because of the default behavior being a shallow copy, extending classes only need to handle fields that need to have a deeper copy (or those that need to be reset). Some of the methods in ObjectUtil may be helpful in implementing a custom clone method. Note: The contract of this method is that you must use super.clone() as the basis for your implementation.

Specified by:

clone in interface CloneableSerializable

Overrides:

clone in class AbstractCloneableSerializable

Returns:

A clone of this object.

getPairwiseTest

public NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>> getPairwiseTest()

Getter for pairwiseTest

Returns:

Confidence test used for pair-wise null-hypothesis tests.

setPairwiseTest

public void setPairwiseTest(NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>> pairwiseTest)

Setter for pairwiseTest

Parameters:

pairwiseTest - Confidence test used for pair-wise null-hypothesis tests.