@PublicationReference(author="Wikipedia", title="Holm\u2013Bonferroni method", type=WebPage, url="http://en.wikipedia.org/wiki/Holm%E2%80%93Bonferroni_method", year=2011) public class HolmCorrection extends AbstractPairwiseMultipleHypothesisComparison<HolmCorrection.Statistic>
Modifier and Type | Class and Description |
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static class |
HolmCorrection.Statistic
Test statistic from the Shaffer static multiple-comparison test
|
DEFAULT_PAIRWISE_TEST, pairwiseTest
DEFAULT_UNCOMPENSATED_ALPHA
Constructor and Description |
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HolmCorrection()
Default constructor
|
HolmCorrection(NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>> pairwiseTest)
Creates a new instance of BonferroniCorrection
|
Modifier and Type | Method and Description |
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HolmCorrection |
clone()
This makes public the clone method on the
Object class and
removes the exception that it throws. |
HolmCorrection.Statistic |
evaluateNullHypotheses(java.util.Collection<? extends java.util.Collection<? extends java.lang.Number>> data,
double uncompensatedAlpha)
Evaluates the null hypotheses associated with the given collection
of data.
|
getPairwiseTest, setPairwiseTest
evaluateNullHypotheses
public HolmCorrection()
public HolmCorrection(NullHypothesisEvaluator<java.util.Collection<? extends java.lang.Number>> pairwiseTest)
pairwiseTest
- Confidence test used for pair-wise null-hypothesis tests.public HolmCorrection clone()
AbstractCloneableSerializable
Object
class and
removes the exception that it throws. Its default behavior is to
automatically create a clone of the exact type of object that the
clone is called on and to copy all primitives but to keep all references,
which means it is a shallow copy.
Extensions of this class may want to override this method (but call
super.clone()
to implement a "smart copy". That is, to target
the most common use case for creating a copy of the object. Because of
the default behavior being a shallow copy, extending classes only need
to handle fields that need to have a deeper copy (or those that need to
be reset). Some of the methods in ObjectUtil
may be helpful in
implementing a custom clone method.
Note: The contract of this method is that you must use
super.clone()
as the basis for your implementation.clone
in interface CloneableSerializable
clone
in class AbstractPairwiseMultipleHypothesisComparison<HolmCorrection.Statistic>
public HolmCorrection.Statistic evaluateNullHypotheses(java.util.Collection<? extends java.util.Collection<? extends java.lang.Number>> data, double uncompensatedAlpha)
MultipleHypothesisComparison
evaluateNullHypotheses
in interface MultipleHypothesisComparison<java.util.Collection<? extends java.lang.Number>>
evaluateNullHypotheses
in class AbstractMultipleHypothesisComparison<java.util.Collection<? extends java.lang.Number>,HolmCorrection.Statistic>
data
- Data from each treatment to consideruncompensatedAlpha
- Uncompensated alpha (p-value threshold) for the multiple comparison
test, must be [0,1]